Install stringi (I required this package additionally).Any thing else should be reviewed.Īctive sample quality check - FlowAI in FlowJoįlowJo also provides access to 2 active cytometry data quality plugins. F lowJo plots the median values for each parameter over time and flags any that are outside of 2 standard deviations. This will flag samples that should be checked. In FlowJo, after importing your cytometry data, click the 'Check sample quality' button in the tools workspace. R package vigenettes (which are the mini guides for each package developed in R)ĭata pre-processing in FlowJo using R plugins.Many automated population clustering optionsĬode is easier to understand compared to R (personal advantage, although this will likely change soon)įlow cytometry analysis community is heavily developing in R compared to MatlabĮxcellent links for information that was used for R/Rstudio/flowCore Useful for single cell workflows (RNA/DNA) Same as R but with friendlier user interfaceĬumbersome to implement new advanced analysis methods - has been improved. Most automated population clustering options
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